Details
| Name | Porechop_ABI |
|---|---|
| Version | 0.5.0 |
| Description | Porechop_ABI (ab initio) is an extension of Porechop whose purpose is to process adapter sequences in ONT reads. The difference with the initial version of Porechop is that Porechop_ABI does not use any external knowledge or database for the adapters. Adapters are discovered directly from the reads using approximate k-mers counting and assembly. Then these sequences can be used for trimming, using all standard Porechop options. The software is able to report a combination of distinct sequences if a mix of adapters is used. It can also be used to check whether a dataset has already been trimmed out or not, or to find leftover adapters in datasets that have been previously processed with Guppy. Note that Porechop_ABI is not designed to handle barcoded sequences adapters. Demultiplexing should be done using standard Porechop commands or other appropriate tools. |
| bio.tools | https://bio.tools/porechop_abi |
| Homepage | https://github.com/bonsai-team/Porechop_ABI |
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