Bioinformatics, Genomics, Mapping, Sequence alignment, Data quality management, Sequencing, Workflows, Sequence analysis
aurelien beliard ICM-ICONICS
Bioinformatics, Computational biology, Data management, Transcriptomics, Data visualisation, Data architecture, analysis and design, Statistics and probability
Aurélie Siberchicot (aurelie.siberchicot@univ-lyon1.fr)
Sequence alignment, Phylogenetics, Phylogenomics, Taxonomy, Imaging, Model organisms, Workflows, Sequence analysis, Sequencing, Genomics, DNA, Mapping, Microbial ecology, Sequence assembly, Metagenomics
Martial Marbouty (Institut Pasteur)
bam-readcount, BEDTools, BWA, CONCOCT, DESeq2, Diamond, Kraken, MAFFT, Matplotlib, MEGAHIT, prodigal, R - base, SAMtools, SPAdes
Transcriptomics, Informatics, Sequencing, Genomics, Metagenomics, Phylogenetics, Bioinformatics, Data visualisation, Statistics and probability, Sequence assembly, Mapping, Sequence analysis
Lois Maignien, EBAME organization
BEDTools, Bowtie2, DESeq2, edgeR, HTSeq, limma (R), Matplotlib, Numpy, pysam, RStudio, SAMtools, Tophat
Sequence alignment, ChIP-seq, Molecular biology, Data architecture, analysis and design, Data visualisation, Genetics, Informatics, Sequencing, Mapping, Transcriptomics, RNA-Seq, Sequence analysis, Genomics
Christophe Blanchet (IFB-core)
BiocStyle, ButchR, clusterProfiler, ComplexHeatmap, DESeq2, DT (R), factoextra, FactoMineR, gage, GGally, ggupset, MMseqs2, MOFA2, msigdbr, RStudio, umap, viridis, YAPSA
Literature and language, Transcriptomics, Sequence assembly, Machine learning, Statistics and probability, Sequence analysis, Genomics, Data architecture, analysis and design, Genetic variation, Oncology, Applied mathematics, Genetics, Data mining, Molecular interactions, pathways and networks, Data visualisation
Lucie Khamvongsa-Charbonnier IFB-core
BiNGO (Cytoscape), Bureau virtuel, compositions (R), Cytoscape, DESeq2, ecodist, igraph, MMseqs2, network, Omics Visualizer (Cytoscape), RStudio, SNFtool, stringApp (Cytoscape), WGCNA, X2Go, XFCE, yFiles Layout Algorithms (Cytoscape)
Transcriptomics, Sequence analysis, Sequence assembly, Gene expression, Rare diseases, Informatics, Functional genomics, Bioinformatics, Ecology, Protein interactions, Data architecture, analysis and design, Molecular interactions, pathways and networks, Data visualisation
Lucie Khamvongsa-Charbonnier IFB-core
Phylogenetics, Population genetics, Protein structure analysis, Sequence alignment, Sequence clustering, Sequence comparison, Data architecture, analysis and design, Mathematics, Statistics and probability, Computer science, Sequencing, Sequence assembly, Sequence analysis, Mapping
Christine TRANCHANT DIADE
Computational biology, Data management, Sequence analysis, Mapping, Sequence alignment, Protein folds and structural domains, Sequence comparison, Sequence composition, complexity and repeats, Sequence sites, features and motifs, Data visualisation, Bioinformatics, Statistics and probability, Environmental science, Genomics
Stephane Delmotte Formation NGS-09
Bioinformatics, Computational biology, Data management, Statistics and probability, Sequence assembly, Transcriptomics, RNA-Seq
Stephane Delmotte stephane.delmotte@univ-lyon1.fr
Mathematics, Statistics and probability, Data visualisation, Phylogenomics, Data architecture, analysis and design
Guillaume Launay, Université Claude Bernard Lyon 1 (Environnement pédagogique)
bioPython, bowtie2, cap3, ete3, FastQC, Matplotlib, muscle, Numpy, phyml, pysam, python, QUAST, SAMtools, Scipy, SPAdes, sratoolkit, yass
Phylogenetics, Protein structure analysis, Data visualisation, Phylogenomics, Phylogeny, Sequence analysis, Genomics, Mapping, Informatics, Sequencing, Bioinformatics, Genotype and phenotype, Population genomics, Population genetics, Sequence assembly
Mathieu GENETE, EEP CNRS UMR8198
BEDTools, dada2, DESeq2, HISAT2, IGV - Integrative Genomics Viewer, Matplotlib, MMseqs2, RStudio, SAMtools, Web interface
Genetic variation, Metagenomics, Microbial ecology, Transcriptomics, Whole genome sequencing, Informatics, Sequence assembly, Sequencing, Mapping, Sequence analysis, Genomics, Data architecture, analysis and design, Data visualisation
Stephane Delmotte
Statistics and probability, Data architecture, analysis and design, Bioinformatics, Metagenomics, Data visualisation
Amine Ghozlane (Institut Pasteur)
Genetic variation, Microbial ecology, Sequencing, Transcriptomics, Microbiology, Sequence analysis, Data architecture, analysis and design, Metagenomics, Data visualisation
Philippe RUIZ (UMR454 MEDIS)
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