Bioinformatics, Genomics, Mapping, Sequence alignment, Data quality management, Sequencing, Workflows, Sequence analysis
aurelien beliard ICM-ICONICS
Phylogenetics, Population genetics, Protein structure analysis, Sequence analysis, Informatics, Genomics, Mapping, Sequencing
Lois Maignien, EBAME organization
ABySS, BEDTools, Bioconductor, BUSCO, FastQC, HISAT2, IGV - Integrative Genomics Viewer, KisSplice, KmerGenie, pysam, UrQt
Bioinformatics, Computational biology, Data management, Statistics and probability, Transcriptomics, Whole genome sequencing, RNA-Seq, Sequence analysis, Data quality management, Mapping, Sequencing, Sequence assembly, Genomics
Stephane Delmotte COURS LBBE NGS 2018
BAMtools, bandage, bcftools_view, BEDTools, BLAST, bowtie2, BWA, DeepTools, FastQC, Galaxy portal, lastz, QUAST, SAMtools, SPAdes, Trimmomatic
Data management, Sequence alignment, ChIP-seq, Comparative genomics, Functional genomics, Whole genome sequencing, Data quality management, Sequencing, Sequence analysis, Mapping, Sequence assembly, Genomics
Guillaume Brysbaert UGSF
bcftools, BEDTools, BWA, Canvas, FastQC, GATK, IGV - Integrative Genomics Viewer, IRSOM, Matplotlib, Numpy, pandas, plotnine, SAMtools, TensorFlow
SNP, Data quality management, Informatics, Genetic variation, Genotyping experiment, GWAS study, Mapping, Applied mathematics, Data visualisation, DNA polymorphism, Genomics, Sequencing, Machine learning, Sequence analysis
Vincent MEYER, CNRGH, CEA
Bioinformatics, Computational biology, Data management, Statistics and probability, Sequence assembly, Transcriptomics, RNA-Seq
Stephane Delmotte stephane.delmotte@univ-lyon1.fr
Mathematics, Statistics and probability, Data visualisation, Phylogenomics, Data architecture, analysis and design
Guillaume Launay, Université Claude Bernard Lyon 1 (Environnement pédagogique)
bioPython, bowtie2, cap3, ete3, FastQC, Matplotlib, muscle, Numpy, phyml, pysam, python, QUAST, SAMtools, Scipy, SPAdes, sratoolkit, yass
Phylogenetics, Protein structure analysis, Data visualisation, Phylogenomics, Phylogeny, Mapping, Sequence analysis, Genomics, Sequencing, Informatics, Bioinformatics, Genotype and phenotype, Population genomics, Population genetics, Sequence assembly
Mathieu GENETE, EEP CNRS UMR8198
BEDTools, BLAST, Bowtie, bowtie2, Clustal Omega, cmake, DESeq2, FastQC, MACS2, muscle, phyml, R - base, SAMtools, Seaview, Trinity
Note that the color code has no meaning other than being constant for a given appliance.
