Topic "Sequence analysis"

Details

Family	Topic
Label	Sequence analysis
Parent	Computational biology
Definition	The archival, processing and analysis of molecular sequences (monomer composition of polymers) including molecular sequence data resources, sequence sites, alignments, motifs and profiles.
Exact synonyms	Sequences
Narrow synonyms	Sequence databases Biological sequences
bio.tools	http://edamontology.org/topic_0080
Appliances	AnalysesSV (1.0) ANF MetaBioDiv (1.0) ateliersUARDoHNEE (1.0) BactComparativeGenomics (1.0) bistar (1.0) CoursAnalysesNanoporeSG (1.0) EBAME-Quince (2024-10) ENSL-CPES-RNAseq 2025 (0.1) ETBII AnalyseMultivariée (1.1) Evo-1.5 (0.1) formation_CIRI (1.0) frangiPANe (1.0) UE NGS-ENS Lyon (2026.1) virus_ONT (1.0)
Tools	Arf Ballast BAMtools bioPython BLAST BLAT bowtie2 bowtie2 BUSCO Centrifuge Clustal W CoverM CRISPRDetect dDocent Diamond eoulsan EuGene FastA36 FastQC fatsp Frogs GATK geNomad HTSeq Infernal LEON-bis LoRDEC MAFFT miniasm MMseqs2 MultiQC ncPRO-seq Nebula - AnnotateGenes Nebula - MakeTSSdist Oases opscan phyloseq PILER prodigal Prokka SAMtools SeqClean seqkit SMRT Analysis TGICL TRF Trim Galore Trimmomatic VCFtools VSEARCH

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